Host microorganisms

ABSTRACT

A microorganism wherein one or more genes selected from the group of genes participating in sporulation in the middle to late stages of sporulation have been deleted or inactivated; and a process for producing a target product (a protein) by use the microorganism. No spore is formed when this microorganism is employed, thereby enabling production of a target product (a protein) while decreasing energy loss, production of a by-product and specific production speed to decrease unnecessary consumption of a medium. Moreover, the production period can be prolonged, whereby the target product (the protein) can be produced efficiently.

TECHNICAL FIELD

[0001] The present invention relates to a host microorganism which is useful for the production of useful proteins or polypeptides, and to a recombinant microorganism.

BACKGROUND ART

[0002] Microorganisms have been employed in the industrial production of a broad range of useful substances. For example, microorganisms have been used to produce not only alcoholic beverages and foods such as miso (fermented soy paste) and shoyu (soy sauce), but also amino acids, organic acids, nucleic acid-related substances, antibiotics, sugars, lipids, proteins, and many other types of substances. Use of such substances can be found in a wide range of fields, encompassing foods, pharmaceuticals, daily necessaries such as detergents and cosmetics, and a variety of raw materials for producing items through chemical processes.

[0003] One important issue in the industrial production of useful substances through use of microorganisms is improvement in productivity. Thus, as a measure therefor, cultivation of substance-producing microorganisms has been performed through traditional genetic techniques such as mutation. In particular, thanks to progress in microbial genetics and biotechnology, such cultivation of substance-producing microorganisms is now being carried out more efficiently than ever by use of a genetic technologies such as a genetic engineering technology, giving rise to development of host microorganisms useful for genetic recombination. For example, there has been developed a microorganism strain, which resulted from improvement of a microorganism strain Bacillus subtilis Marburg No. 168 that had been acknowledged to be safe and excellent.

[0004] Microorganisms harbor a diversity of genes, so that they can adapt themselves to environmental changes in the natural kingdom. Therefore, substance productivity of microorganisms cannot necessarily be said to be efficient in terms of industrial production of proteins or similar substances employing limited types of production medium.

[0005] Also, concerning certain types of microorganisms, there have been established strains in which genes participating in early stage sporulation are singly deleted or inactivated. However, these strains will not be said to be sufficiently improved in productivity.

[0006] Accordingly, an object of the present invention is to provide a host microorganism with which production of proteins or polypeptides can be increased through removal of genes which are useless or harmful in the production of proteins or polypeptides from the genome or inactivation of such genes. Another object of the present invention is to provide a recombinant microorganism produced by incorporating, into the above-mentioned host microorganism, a gene which codes for a protein or polypeptide and which is ligated to a transcription initiation regulation region, translation initiation regulation region, or secretion signal region at the downstream end of the region. Yet another object of the present invention is to provide a method for producing a protein or polypeptide by use of the recombinant microorganism.

DISCLOSURE OF THE INVENTION

[0007] The present inventors have extensively searched, among a variety of genes encoded on a microorganism genome, for genes which are useless or function harmfully in the production of useful proteins or polypeptides, and have found that productivity of a protein or polypeptide of interest can be enhanced by deleting from the genome a specific gene participating in sporulation or by inactivating the gene, and then incorporating into the microorganism a gene which encodes a target protein or polypeptide and which has been ligated to a suitable transcriptional initiation region, a translational initiation region, or a secretion signal region, as compared with the productivity attained by the microorganism without such deletion or inactivation.

[0008] Accordingly, the present invention provides a microorganism in which one or more genes selected from the genes which participate in sporulation in the middle to late stages of sporulation have been deleted or inactivated; a recombinant microorganism obtained by incorporating, into the gene-deleted or gene-inactivated microorganism, a gene which encodes a protein or polypeptide and which has been ligated to a transcription initiation regulation region, a translation initiation regulation region, or a secretion signal region at the downstream end of the region; and a method for producing a protein or polypeptide through use of the recombinant microorganism.

BEST MODE FOR CARRYING OUT THE INVENTION

[0009] No limitations are imposed on the parental microorganism which is used to construct the microorganism of the present invention, so long as it has a gene which participates in sporulation. Preferably, the parental microorganism is a spore-forming microorganism. The parental microorganism may be a wild type or a mutant. Specific examples include bacteria belonging to the genus Bacillus such as Bacillus subtilis, bacteria belonging to the genus Clostridium, and yeasts, with bacteria belonging to the genus Bacillus being preferred. Among them, Bacillus subtilis is particularly preferred, in view that its complete genome information has already been elucidated, that techniques of genetic engineering and genomic engineering have been established, and that bacteria belonging to the Bacillus subtilis have an ability to secrete proteins outside the cells.

[0010] Examples of the target protein or polypeptide which is produced by use of the microorganism of the present invention include enzymes which are useful for foodstuffs, drugs, cosmetics, detergents, fiber treatment, drugs for medical tests, etc.; and proteins and polypeptides such as physiological active factors.

[0011] Two hundred and fifty or more genes discretely present on the genome have been identified to take part in sporulation. Among them, a target gene to be deleted or inactivated in the present invention is preferably a gene that promotes sporulation, and examples of such a gene include those encoding a sporulation-stage-specific σ-factor, genes participating in expression of any of the σ-factor genes, and genes participating in activation of any of the σ-factors. In addition, genes which are transcribed by any of the σ-factors to thereby participate in promotion of sporulation are also included within the scope of the present invention. In the early stage of sporulation (stages 0-I), extracellular enzymes such as proteases and amylases have been known to be produced in increased amounts as compared with the amounts produced in logarithmic growth phases. Therefore, a target gene to be deleted or inactivated is preferably one or more genes which are expressed specifically in the middle to late stages of sporulation to thereby participate in sporulation. Specifically, a target gene is preferably one or more genes involved in the sporulation stage II, III, IV, or V, more preferably stage II or III, particularly preferably stage II. The present inventors have found that these genes are not directly involved in production of proteins of interest and are also not required for growth of the microorganisms in ordinary medium for industrial production.

[0012] Such genes of Bacillus subtilis are listed in Tables 1 and 2.

[0013] In the present specification, names, sites, base numbers, and functions of the genes are described on the basis of the Bacillus subtilis genome database that has been reported in Nature, 390, 249-256 (1997) and also published by JAFAN: Japan Functional Analysis Network for Bacillus subtilis (BSORF DB) (http://bacillus.genome.ad.jp/). TABLE 1 Gene Site (kb) Function sigE 1,604 Stage II, mother cell-specific σE factor sigF 2,443 Stage II, forespore-specific σF factor spoIISB 1,328 Stage II and subsequent stages, participating in sporulation spoIIE 71 Stage II, activating forespore- specific σF factor sigG 1,605 Stages III-V, forespore-specific σG factor spoIVCB - 2,652-2,701 Stages IV-V, mother cell-specific σK spoIIIC factor

[0014] TABLE 2 Gene Site (kb) Function spoIIGA 1,604 Stage II, activating mother cell- specific σE factor spoIIAA 2,444 Stage II, participating in activation of forespore-specific σF factor spoIVFB 2,855 Stages IV-V, activating mother cell- specific σK factor SpoIIR 3,794 Stage II, participating in activation of mother cell-specific σE factor SpoIIIJ 4,213 Stages III-V, participating in activation of forespore-specific σG factor

[0015] The following genes are considered to be equivalent to the genes listed in Table 1: Genes having the same functions as those of the Bacillus subtilis genes listed in Table 1 or 2, and genes derived from other microorganisms, preferably derived from a bacterium which belongs to the genus Bacillus, and exhibiting 70% or more homology, preferably 80% or more, more preferably 90% or more homology, with one of the genes listed in Table 1. These genes are included in the genes which are to be deleted or inactivated according to the present invention. Homology between amino acid sequences is calculated through the Lipman-Pearson method (Science, 227, 1435 (1985)).

[0016] When one or more genes selected from among the genes described above are deleted or inactivated, chemical energy consumption required for sporulation of the microorganism is reduced, production period of proteins or polypeptides is prolonged, or other benefits are obtained, resulting in improved productivity of the proteins or polypeptides.

[0017] No limitations are imposed on the number of the genes which are deleted or inactivated, so long as at least one gene is deleted or inactivated. The number may be three or more, or five or more. The number is preferably two or three, particularly preferably two.

[0018] In order to construct the microorganism of the present invention, one or more genes in addition to the above genes may be deleted or inactivated. Through such a combination, a greater effect in improvement of the productivity could be expected.

[0019] Deletion or inactivation of a gene can be performed through known methods. Examples include a method in which target genes are sequentially deleted or inactivated, and a method in which one or more arbitrary DNA fragments are deleted or mutated for inactivation and the resultant gene is analyzed and evaluated in terms of the protein productivity by means of a suitable technique.

[0020] A target gene is deleted or inactivated through, for example, a homologous recombination method. Specifically, a DNA fragment containing a target gene is obtained through cloning by use of a suitable plasmid vector. The obtained DNA fragment is mutated by, among other methods, deleting the entire region of the gene or a portion of the target gene region through a routine gene engineering technique while retaining the DNA fragments connected to the respective ends of the target gene; by causing a nonsense mutation in the structural gene through base substitution, frameshift mutation or the like; or by isolating the target gene fragment through cloning or PCR and inserting a DNA fragment into the isolated target gene fragment. Subsequently, the mutated DNA fragment is introduced into a parental microorganism, to thereby cause homologous recombination with the parental microorganism genome at both regions adjacent to the target gene at the respective ends thereof. Thus, the target gene on the genome can be substituted by a DNA fragment in which the target gene has been deleted or inactivated.

[0021] Several methods have been reported for deleting or inactivating a target gene through homologous recombination when a bacteria in Bacillus subtilis is employed as a parental microorganism for producing the microorganism of the present invention (e.g., Mol. Gen. Genet., 223, 268 (1990)). The host microorganism of the present invention can be obtained through repetition of such a method.

[0022] Deletion or inactivation of one or more arbitrary DNA fragments can also be performed by obtaining one or more arbitrary DNA fragments from a parental microorganism through cloning and performing homologous recombination by use of the fragments in a manner similar to that described above, or alternatively by radiation of a γ-ray to the parental microorganism.

[0023] The recombinant microorganism of the present invention can be obtained by incorporating a gene encoding a target protein or polypeptide (hereinafter referred to as “a target protein or polypeptide gene”) to the thus-obtained microorganism (host microorganism) in which one or more genes selected from the genes participating in sporulation in the middle to late stages of sporulation have been deleted or inactivated.

[0024] No limitations are imposed on the target protein or polypeptide gene. Examples of such genes include industrially usable enzymes such as enzymes for producing detergents, food, fibers, feed, and chemicals, for medical use, and for diagnosis, and physiologically active peptides. The industrially usable enzymes may be classified, on the basis of their functions, into oxidoreductases, transferases, hydrolases, lyases, isomerases, ligases/synthetases, and others. Preferred examples of the target protein or polypeptide gene include genes encoding a hydrolase such as a cellulase, an α-amylase, or a protease. Specific examples include cellulases belonging to the family 5 in Classification of polysaccharide hydrolases (Biochem. J., 280, 309 (1991)). Among them, cellulases derived from a microorganism, particularly cellulases derived from a bacterium belonging to the genus Bacillus are illustrated. More specific examples include alkaline cellulases derived from a bacterium belonging to the genus Bacillus and having a sequence of SEQ ID NO: 1 or 2, and cellulases having a sequence having 70% or more, preferably 80% or more, more preferably 90% or more homology with the sequence of SEQ ID NO: 1 or 2. The homology between amino acid sequences is determined through the Lipman-Pearson method (Science, 227, 1435 (1985)). Examples of the α-amylases include α-amylases derived from a microorganism, and liquefaction-type amylases derived from a bacterium belonging to the genus Bacillus are particularly preferred. Examples of the proteases include serine proteases and metal proteases derived from a microorganism, particularly derived from a bacterium belonging to the genus Bacillus.

[0025] A target protein or polypeptide gene is desirably ligated, at the upstream end thereof, to a regulation region participating in transcription or translation of the gene or secretion of the gene product, i.e., a transcriptional initiation regulation region containing a promoter and a transcriptional initiation point, a translation initiation region containing a ribosome binding site and an initiation codon, or a secretion signal peptide region in a suitable form. For example, a target protein or polypeptide gene is desirably ligated to the above regulation regions contained in a cellulase gene derived from a bacterium belonging to the genus Bacillus which is described in, for example, Japanese Patent Application Laid-Open (kokai) No. 2000-210081 or Hei 4-190793, and the above regulation regions contained in a region adjacent to the cellulase gene at the upstream end of the gene and having a length of 1 kb or less, preferably 0.6 kb or less. Specifically, a target protein or polypeptide gene is desirably ligated to, among others, a sequence of SEQ ID NO: 1 or 2, or a base sequence having a certain degree of homology with SEQ ID NO: 1 or 2 and having a regulation function similar to that described above.

[0026] The recombinant microorganism of the present invention can be obtained by combining a DNA fragment containing a target protein or polypeptide gene with a suitable plasmid vector and incorporating the recombinant plasmid into a host microorganism cell through a routine transformation method. Alternatively, the recombinant microorganism of the present invention can be obtained by using as the DNA fragment a DNA fragment ligated to a suitable homological region of a host microorganism gene and incorporating the resultant DNA fragment directly into the host microorganism gene.

[0027] Production of a target protein or polypeptide through use of the recombinant microorganism of the present invention may be performed by inoculating the recombinant microorganism into a medium containing an assimilable source of carbon and nitrogen and the other essential components, culturing the recombinant microorganism through a conventional method, and, after completion of culture, collecting and purifying the target protein or polypeptide.

[0028] As described above, a host microorganism of interest in which a sporulation-related gene has been deleted or inactivated can be produced, and a recombinant microorganism of interest can be produced through use of the host microorganism. In addition, by use of the recombinant microorganism, a useful protein or polypeptide can be produced efficiently. An example case in which α-amylase or cellulase is produced through use of Bacillus subtilis will next be specifically described.

[0029] For example, when the sigf gene of a bacterium Bacillus subtilis (768 bp) encoding an RNA polymerase subunit σF-factor which expresses in a forespore in stage II or subsequent stages of sporulation is to be deleted, the following procedure may be employed.

[0030] In the first step, a genome gene is extracted from a host microorganism of a Bacillus subtilis strain. Using the genome gene as a template, a DNA fragment at the upstream of the initiation codon of the sigF gene and a DNA fragment at the downstream of the termination codon of the sigf gene are joined by a marker gene such as chloramphenicol resistant gene inserted therebetween through SOE (splicing by overlap extention)—PCR (Gene, 77, 61 (1989)) or other methods.

[0031] In the next step, the host bacterium Bacillus subtilis is transformed by use of the thus-obtained DNA fragment through a competent method, and the transformant is isolated on the basis of chloramphenicol resistance or other characteristics, to thereby cause homologous recombination in the upstream and downstream regions of the sigf gene to give a transformant in which the sigf gene on the genome is substituted by a marker gene such as a chloramphenicol resistant gene or the like.

[0032] Thereafter, into the thus-obtained transformant and the original cell line of Bacillus subtilis serving as a control, a plasmid containing a gene encoding α-amylase or cellulase is introduced. The thus-obtained recombinant is incubated under suitable conditions, for example, under shaking in a vegetative medium. The supernatant of the culture solution is measured in terms of α-amylase activity or cellulase activity, and it's productivity is compared with that of the original cell line of Bacillus subtilis, to thereby confirm that an increased amount of the target product can be obtained by deleting the sigf gene. When the culture solution is subjected to an isolation and purification procedure, α-amylase and cellulase can be obtained.

EXAMPLES Example 1

[0033] A genomic DNA was extracted from Bacillus subtilis 168. Using the extracted gene as a template, a 1.5-kb DNA fragment (A), on the genome, adjacent to the sigf gene (Base No. 2442658←2443425) at the upstream end thereof and a 1.5-kb DNA fragment (B) adjacent to the sigf gene at the downstream end thereof were multiplied. Separately, a 0.9-kb DNA fragment (C) containing a chloramphenicol resistant gene was multiplied using plasmid pC194 as a template. The fragments (A), (B), and (C) were serially ligated in this order, through SOE-PCR, to thereby prepare a 3.9-kb DNA fragment. The Bacillus subtilis 168 was transformed using the thus-obtained DNA fragment through a competent method. The transformed Bacillus subtilis 168 was cultured on an LB agar medium containing chloramphenicol, and the colonies were isolated as a transformant. The resulting transformant was confirmed through PCR and sequencing to have a genome in which the region containing the sigF gene (2442632-2443318) had been deleted and substituted by the chloramphenicol resistant gene. Separately, each of the following regions on the genome was deleted and substituted by the chloramphenicol resistant gene in a manner similar to that described above: a region (1604136-1604976) containing the sigE gene (1604166→1604885), a region (1347781-1348081) containing a substantial part of the spoIISB gene (1347913←1348083), a region (70537-73018) containing a substantial part of the spoIIE gene (70536→73019), a region (1605083-1605877) containing a substantial part of the sigG gene (1605025->1605807), a region (2652156-2652723) containing the spoIVCB gene (2652262→2652732), or a region (2652156-2701031) containing a region from the spoIVCB gene to the spoIIIC gene (2652262→2701023), to thereby prepare a microorganism in which a gene participating in sporulation is deleted.

[0034] A DNA fragment (3.1 kb) of the alkaline cellulase gene derived from Bacillus sp. KSM-S237 (Japanese Patent Application Laid-Open (kokai) No. 2000-210081) was introduced into a shuttle vector pHY300PLK at the cleavage point of restriction enzyme BamHI, to thereby prepare a recombinant plasmid pHY-S237. The plasmid was incorporated through the protoplast method into each of the gene-deleted microorganisms prepared in Example 1 and Bacillus subtilis 168 serving as a control. The thus-obtained microorganism was incubated overnight under shaking at 37° C. in an LB medium (10 mL). The resultant culture solution (0.05 mL) was inoculated to 2×L-maltose medium (50 mL; 2% trypton, 1% yeast extraction, 1% NaCl, 7.5% maltose, 7.5-ppm manganese sulfate 4-5 hydrate, 15-ppm tetracyclin), followed by incubation for three days under shaking at 30° C. After completion of incubation, the cells were removed from the culture solution through centrifugation, and the alkaline cellulase activity of the supernatant was measured to determine the amount of alkaline cellulase secreted outside the cells during incubation. As a result, as shown in Table 3, all of the microorganisms in which a gene participating in sporulation had been deleted were found to secrete an increased amount of alkaline cellulase as compared with the control microorganism Bacillus subtilis 168 (wild type). TABLE 3 Site of the Amount of alkaline cellulase Deleted gene gene (kb) secreted (relative value) sigE 1,604 217 sigF 2,443 212 spoIISB 1,328 140 spoIIE 71 216 sigG 1,605 163 spoIVCB - spoIIIC 2,652-2,701 141 spoIVCB 2,652 141 None (wild type) — 100

INDUSTRIAL APPLICABILITY

[0035] When the microorganism of the present invention is employed, no spores are formed. Therefore, the invention enables production of a target protein or target polypeptide while decreasing energy loss, production of by-products and specific production speed to largely decrease unnecessary consumption of a medium. Moreover, the production period of the protein or polypeptide can be prolonged, whereby the target product can be produced efficiently.

1 4 1 3150 DNA Bacillus sp. KSM-S237 CDS (573)..(3044) sig_peptide (573)..(659) mat_peptide (660)..(3044) 1 gatttgccga tgcaacaggc ttatatttag aggaaatttc tttttaaatt gaatacggaa 60 taaaatcagg taaacaggtc ctgattttat ttttttgagt tttttagaga actgaagatt 120 gaaataaaag tagaagacaa aggacataag aaaattgcat tagttttaat tatagaaaac 180 gcctttttat aattatttat acctagaacg aaaatactgt ttcgaaagcg gtttactata 240 aaaccttata ttccggctct tttttaaaac agggggtaaa aattcactct agtattctaa 300 tttcaacatg ctataataaa tttgtaagac gcaatatgca tctctttttt tacgatatat 360 gtaagcggtt aaccttgtgc tatatgccga tttaggaagg ggggtagatt gagtcaagta 420 gtaataatat agataactta taagttgttg agaagcagga gagcatctgg gttactcaca 480 agttttttta aaactttaac gaaagcactt tcggtaatgc ttatgaattt agctatttga 540 ttcaattact ttaaaaatat ttaggaggta at atg atg tta aga aag aaa aca 593 Met Met Leu Arg Lys Lys Thr -25 aag cag ttg att tct tcc att ctt att tta gtt tta ctt cta tct tta 641 Lys Gln Leu Ile Ser Ser Ile Leu Ile Leu Val Leu Leu Leu Ser Leu -20 -15 -10 ttt ccg gca gct ctt gca gca gaa gga aac act cgt gaa gac aat ttt 689 Phe Pro Ala Ala Leu Ala Ala Glu Gly Asn Thr Arg Glu Asp Asn Phe -5 -1 1 5 10 aaa cat tta tta ggt aat gac aat gtt aaa cgc cct tct gag gct ggc 737 Lys His Leu Leu Gly Asn Asp Asn Val Lys Arg Pro Ser Glu Ala Gly 15 20 25 gca tta caa tta caa gaa gtc gat gga caa atg aca tta gta gat caa 785 Ala Leu Gln Leu Gln Glu Val Asp Gly Gln Met Thr Leu Val Asp Gln 30 35 40 cat gga gaa aaa att caa tta cgt gga atg agt aca cac gga tta cag 833 His Gly Glu Lys Ile Gln Leu Arg Gly Met Ser Thr His Gly Leu Gln 45 50 55 tgg ttt cct gag atc ttg aat gat aac gca tac aaa gct ctt tct aac 881 Trp Phe Pro Glu Ile Leu Asn Asp Asn Ala Tyr Lys Ala Leu Ser Asn 60 65 70 gat tgg gat tcc aat atg att cgt ctt gct atg tat gta ggt gaa aat 929 Asp Trp Asp Ser Asn Met Ile Arg Leu Ala Met Tyr Val Gly Glu Asn 75 80 85 90 ggg tac gct aca aac cct gag tta atc aaa caa aga gtg att gat gga 977 Gly Tyr Ala Thr Asn Pro Glu Leu Ile Lys Gln Arg Val Ile Asp Gly 95 100 105 att gag tta gcg att gaa aat gac atg tat gtt att gtt gac tgg cat 1025 Ile Glu Leu Ala Ile Glu Asn Asp Met Tyr Val Ile Val Asp Trp His 110 115 120 gtt cat gcg cca ggt gat cct aga gat cct gtt tat gca ggt gct aaa 1073 Val His Ala Pro Gly Asp Pro Arg Asp Pro Val Tyr Ala Gly Ala Lys 125 130 135 gat ttc ttt aga gaa att gca gct tta tac cct aat aat cca cac att 1121 Asp Phe Phe Arg Glu Ile Ala Ala Leu Tyr Pro Asn Asn Pro His Ile 140 145 150 att tat gag tta gcg aat gag ccg agt agt aat aat aat ggt gga gca 1169 Ile Tyr Glu Leu Ala Asn Glu Pro Ser Ser Asn Asn Asn Gly Gly Ala 155 160 165 170 ggg att ccg aat aac gaa gaa ggt tgg aaa gcg gta aaa gaa tat gct 1217 Gly Ile Pro Asn Asn Glu Glu Gly Trp Lys Ala Val Lys Glu Tyr Ala 175 180 185 gat cca att gta gaa atg tta cgt aaa agc ggt aat gca gat gac aac 1265 Asp Pro Ile Val Glu Met Leu Arg Lys Ser Gly Asn Ala Asp Asp Asn 190 195 200 att atc att gtt ggt agt cca aac tgg agt cag cgt ccg gac tta gca 1313 Ile Ile Ile Val Gly Ser Pro Asn Trp Ser Gln Arg Pro Asp Leu Ala 205 210 215 gct gat aat cca att gat gat cac cat aca atg tat act gtt cac ttc 1361 Ala Asp Asn Pro Ile Asp Asp His His Thr Met Tyr Thr Val His Phe 220 225 230 tac act ggt tca cat gct gct tca act gaa agc tat ccg tct gaa act 1409 Tyr Thr Gly Ser His Ala Ala Ser Thr Glu Ser Tyr Pro Ser Glu Thr 235 240 245 250 cct aac tct gaa aga gga aac gta atg agt aac act cgt tat gcg tta 1457 Pro Asn Ser Glu Arg Gly Asn Val Met Ser Asn Thr Arg Tyr Ala Leu 255 260 265 gaa aac gga gta gcg gta ttt gca aca gag tgg gga acg agt caa gct 1505 Glu Asn Gly Val Ala Val Phe Ala Thr Glu Trp Gly Thr Ser Gln Ala 270 275 280 agt gga gac ggt ggt cct tac ttt gat gaa gca gat gta tgg att gaa 1553 Ser Gly Asp Gly Gly Pro Tyr Phe Asp Glu Ala Asp Val Trp Ile Glu 285 290 295 ttt tta aat gaa aac aac att agc tgg gct aac tgg tct tta acg aat 1601 Phe Leu Asn Glu Asn Asn Ile Ser Trp Ala Asn Trp Ser Leu Thr Asn 300 305 310 aaa aat gaa gta tct ggt gca ttt aca cca ttc gag tta ggt aag tct 1649 Lys Asn Glu Val Ser Gly Ala Phe Thr Pro Phe Glu Leu Gly Lys Ser 315 320 325 330 aac gca acc aat ctt gac cca ggt cca gat cat gtg tgg gca cca gaa 1697 Asn Ala Thr Asn Leu Asp Pro Gly Pro Asp His Val Trp Ala Pro Glu 335 340 345 gaa tta agt ctt tct gga gaa tat gta cgt gct cgt att aaa ggt gtg 1745 Glu Leu Ser Leu Ser Gly Glu Tyr Val Arg Ala Arg Ile Lys Gly Val 350 355 360 aac tat gag cca atc gac cgt aca aaa tac acg aaa gta ctt tgg gac 1793 Asn Tyr Glu Pro Ile Asp Arg Thr Lys Tyr Thr Lys Val Leu Trp Asp 365 370 375 ttt aat gat gga acg aag caa gga ttt gga gtg aat tcg gat tct cca 1841 Phe Asn Asp Gly Thr Lys Gln Gly Phe Gly Val Asn Ser Asp Ser Pro 380 385 390 aat aaa gaa ctt att gca gtt gat aat gaa aac aac act ttg aaa gtt 1889 Asn Lys Glu Leu Ile Ala Val Asp Asn Glu Asn Asn Thr Leu Lys Val 395 400 405 410 tcg gga tta gat gta agt aac gat gtt tca gat ggc aac ttc tgg gct 1937 Ser Gly Leu Asp Val Ser Asn Asp Val Ser Asp Gly Asn Phe Trp Ala 415 420 425 aat gct cgt ctt tct gcc aac ggt tgg gga aaa agt gtt gat att tta 1985 Asn Ala Arg Leu Ser Ala Asn Gly Trp Gly Lys Ser Val Asp Ile Leu 430 435 440 ggt gct gag aag ctt aca atg gat gtt att gtt gat gaa cca acg acg 2033 Gly Ala Glu Lys Leu Thr Met Asp Val Ile Val Asp Glu Pro Thr Thr 445 450 455 gta gct att gcg gcg att cca caa agt agt aaa agt gga tgg gca aat 2081 Val Ala Ile Ala Ala Ile Pro Gln Ser Ser Lys Ser Gly Trp Ala Asn 460 465 470 cca gag cgt gct gtt cga gtg aac gcg gaa gat ttt gtc cag caa acg 2129 Pro Glu Arg Ala Val Arg Val Asn Ala Glu Asp Phe Val Gln Gln Thr 475 480 485 490 gac ggt aag tat aaa gct gga tta aca att aca gga gaa gat gct cct 2177 Asp Gly Lys Tyr Lys Ala Gly Leu Thr Ile Thr Gly Glu Asp Ala Pro 495 500 505 aac cta aaa aat atc gct ttt cat gaa gaa gat aac aat atg aac aac 2225 Asn Leu Lys Asn Ile Ala Phe His Glu Glu Asp Asn Asn Met Asn Asn 510 515 520 atc att ctg ttc gtg gga act gat gca gct gac gtt att tac tta gat 2273 Ile Ile Leu Phe Val Gly Thr Asp Ala Ala Asp Val Ile Tyr Leu Asp 525 530 535 aac att aaa gta att gga aca gaa gtt gaa att cca gtt gtt cat gat 2321 Asn Ile Lys Val Ile Gly Thr Glu Val Glu Ile Pro Val Val His Asp 540 545 550 cca aaa gga gaa gct gtt ctt cct tct gtt ttt gaa gac ggt aca cgt 2369 Pro Lys Gly Glu Ala Val Leu Pro Ser Val Phe Glu Asp Gly Thr Arg 555 560 565 570 caa ggt tgg gac tgg gct gga gag tct ggt gtg aaa aca gct tta aca 2417 Gln Gly Trp Asp Trp Ala Gly Glu Ser Gly Val Lys Thr Ala Leu Thr 575 580 585 att gaa gaa gca aac ggt tct aac gcg tta tca tgg gaa ttt gga tat 2465 Ile Glu Glu Ala Asn Gly Ser Asn Ala Leu Ser Trp Glu Phe Gly Tyr 590 595 600 cca gaa gta aaa cct agt gat aac tgg gca aca gct cca cgt tta gat 2513 Pro Glu Val Lys Pro Ser Asp Asn Trp Ala Thr Ala Pro Arg Leu Asp 605 610 615 ttc tgg aaa tct gac ttg gtt cgc ggt gag aat gat tat gta gct ttt 2561 Phe Trp Lys Ser Asp Leu Val Arg Gly Glu Asn Asp Tyr Val Ala Phe 620 625 630 gat ttc tat cta gat cca gtt cgt gca aca gaa ggc gca atg aat atc 2609 Asp Phe Tyr Leu Asp Pro Val Arg Ala Thr Glu Gly Ala Met Asn Ile 635 640 645 650 aat tta gta ttc cag cca cct act aac ggg tat tgg gta caa gca cca 2657 Asn Leu Val Phe Gln Pro Pro Thr Asn Gly Tyr Trp Val Gln Ala Pro 655 660 665 aaa acg tat acg att aac ttt gat gaa tta gag gaa gcg aat caa gta 2705 Lys Thr Tyr Thr Ile Asn Phe Asp Glu Leu Glu Glu Ala Asn Gln Val 670 675 680 aat ggt tta tat cac tat gaa gtg aaa att aac gta aga gat att aca 2753 Asn Gly Leu Tyr His Tyr Glu Val Lys Ile Asn Val Arg Asp Ile Thr 685 690 695 aac att caa gat gac acg tta cta cgt aac atg atg atc att ttt gca 2801 Asn Ile Gln Asp Asp Thr Leu Leu Arg Asn Met Met Ile Ile Phe Ala 700 705 710 gat gta gaa agt gac ttt gca ggg aga gtc ttt gta gat aat gtt cgt 2849 Asp Val Glu Ser Asp Phe Ala Gly Arg Val Phe Val Asp Asn Val Arg 715 720 725 730 ttt gag ggg gct gct act act gag ccg gtt gaa cca gag cca gtt gat 2897 Phe Glu Gly Ala Ala Thr Thr Glu Pro Val Glu Pro Glu Pro Val Asp 735 740 745 cct ggc gaa gag acg cca cct gtc gat gag aag gaa gcg aaa aaa gaa 2945 Pro Gly Glu Glu Thr Pro Pro Val Asp Glu Lys Glu Ala Lys Lys Glu 750 755 760 caa aaa gaa gca gag aaa gaa gag aaa gaa gca gta aaa gaa gaa aag 2993 Gln Lys Glu Ala Glu Lys Glu Glu Lys Glu Ala Val Lys Glu Glu Lys 765 770 775 aaa gaa gct aaa gaa gaa aag aaa gca gtc aaa aat gag gct aag aaa 3041 Lys Glu Ala Lys Glu Glu Lys Lys Ala Val Lys Asn Glu Ala Lys Lys 780 785 790 aaa taatctatta aactagttat agggttatct aaaggtctga tgtagatctt 3094 Lys 795 ttagataacc tttttcttgc ataactggac acagagttgt tattaaagaa agtaag 3150 2 824 PRT Bacillus sp. KSM-S237 2 Met Met Leu Arg Lys Lys Thr Lys Gln Leu Ile Ser Ser Ile Leu Ile -25 -20 -15 Leu Val Leu Leu Leu Ser Leu Phe Pro Ala Ala Leu Ala Ala Glu Gly -10 -5 -1 1 Asn Thr Arg Glu Asp Asn Phe Lys His Leu Leu Gly Asn Asp Asn Val 5 10 15 Lys Arg Pro Ser Glu Ala Gly Ala Leu Gln Leu Gln Glu Val Asp Gly 20 25 30 35 Gln Met Thr Leu Val Asp Gln His Gly Glu Lys Ile Gln Leu Arg Gly 40 45 50 Met Ser Thr His Gly Leu Gln Trp Phe Pro Glu Ile Leu Asn Asp Asn 55 60 65 Ala Tyr Lys Ala Leu Ser Asn Asp Trp Asp Ser Asn Met Ile Arg Leu 70 75 80 Ala Met Tyr Val Gly Glu Asn Gly Tyr Ala Thr Asn Pro Glu Leu Ile 85 90 95 Lys Gln Arg Val Ile Asp Gly Ile Glu Leu Ala Ile Glu Asn Asp Met 100 105 110 115 Tyr Val Ile Val Asp Trp His Val His Ala Pro Gly Asp Pro Arg Asp 120 125 130 Pro Val Tyr Ala Gly Ala Lys Asp Phe Phe Arg Glu Ile Ala Ala Leu 135 140 145 Tyr Pro Asn Asn Pro His Ile Ile Tyr Glu Leu Ala Asn Glu Pro Ser 150 155 160 Ser Asn Asn Asn Gly Gly Ala Gly Ile Pro Asn Asn Glu Glu Gly Trp 165 170 175 Lys Ala Val Lys Glu Tyr Ala Asp Pro Ile Val Glu Met Leu Arg Lys 180 185 190 195 Ser Gly Asn Ala Asp Asp Asn Ile Ile Ile Val Gly Ser Pro Asn Trp 200 205 210 Ser Gln Arg Pro Asp Leu Ala Ala Asp Asn Pro Ile Asp Asp His His 215 220 225 Thr Met Tyr Thr Val His Phe Tyr Thr Gly Ser His Ala Ala Ser Thr 230 235 240 Glu Ser Tyr Pro Ser Glu Thr Pro Asn Ser Glu Arg Gly Asn Val Met 245 250 255 Ser Asn Thr Arg Tyr Ala Leu Glu Asn Gly Val Ala Val Phe Ala Thr 260 265 270 275 Glu Trp Gly Thr Ser Gln Ala Ser Gly Asp Gly Gly Pro Tyr Phe Asp 280 285 290 Glu Ala Asp Val Trp Ile Glu Phe Leu Asn Glu Asn Asn Ile Ser Trp 295 300 305 Ala Asn Trp Ser Leu Thr Asn Lys Asn Glu Val Ser Gly Ala Phe Thr 310 315 320 Pro Phe Glu Leu Gly Lys Ser Asn Ala Thr Asn Leu Asp Pro Gly Pro 325 330 335 Asp His Val Trp Ala Pro Glu Glu Leu Ser Leu Ser Gly Glu Tyr Val 340 345 350 355 Arg Ala Arg Ile Lys Gly Val Asn Tyr Glu Pro Ile Asp Arg Thr Lys 360 365 370 Tyr Thr Lys Val Leu Trp Asp Phe Asn Asp Gly Thr Lys Gln Gly Phe 375 380 385 Gly Val Asn Ser Asp Ser Pro Asn Lys Glu Leu Ile Ala Val Asp Asn 390 395 400 Glu Asn Asn Thr Leu Lys Val Ser Gly Leu Asp Val Ser Asn Asp Val 405 410 415 Ser Asp Gly Asn Phe Trp Ala Asn Ala Arg Leu Ser Ala Asn Gly Trp 420 425 430 435 Gly Lys Ser Val Asp Ile Leu Gly Ala Glu Lys Leu Thr Met Asp Val 440 445 450 Ile Val Asp Glu Pro Thr Thr Val Ala Ile Ala Ala Ile Pro Gln Ser 455 460 465 Ser Lys Ser Gly Trp Ala Asn Pro Glu Arg Ala Val Arg Val Asn Ala 470 475 480 Glu Asp Phe Val Gln Gln Thr Asp Gly Lys Tyr Lys Ala Gly Leu Thr 485 490 495 Ile Thr Gly Glu Asp Ala Pro Asn Leu Lys Asn Ile Ala Phe His Glu 500 505 510 515 Glu Asp Asn Asn Met Asn Asn Ile Ile Leu Phe Val Gly Thr Asp Ala 520 525 530 Ala Asp Val Ile Tyr Leu Asp Asn Ile Lys Val Ile Gly Thr Glu Val 535 540 545 Glu Ile Pro Val Val His Asp Pro Lys Gly Glu Ala Val Leu Pro Ser 550 555 560 Val Phe Glu Asp Gly Thr Arg Gln Gly Trp Asp Trp Ala Gly Glu Ser 565 570 575 Gly Val Lys Thr Ala Leu Thr Ile Glu Glu Ala Asn Gly Ser Asn Ala 580 585 590 595 Leu Ser Trp Glu Phe Gly Tyr Pro Glu Val Lys Pro Ser Asp Asn Trp 600 605 610 Ala Thr Ala Pro Arg Leu Asp Phe Trp Lys Ser Asp Leu Val Arg Gly 615 620 625 Glu Asn Asp Tyr Val Ala Phe Asp Phe Tyr Leu Asp Pro Val Arg Ala 630 635 640 Thr Glu Gly Ala Met Asn Ile Asn Leu Val Phe Gln Pro Pro Thr Asn 645 650 655 Gly Tyr Trp Val Gln Ala Pro Lys Thr Tyr Thr Ile Asn Phe Asp Glu 660 665 670 675 Leu Glu Glu Ala Asn Gln Val Asn Gly Leu Tyr His Tyr Glu Val Lys 680 685 690 Ile Asn Val Arg Asp Ile Thr Asn Ile Gln Asp Asp Thr Leu Leu Arg 695 700 705 Asn Met Met Ile Ile Phe Ala Asp Val Glu Ser Asp Phe Ala Gly Arg 710 715 720 Val Phe Val Asp Asn Val Arg Phe Glu Gly Ala Ala Thr Thr Glu Pro 725 730 735 Val Glu Pro Glu Pro Val Asp Pro Gly Glu Glu Thr Pro Pro Val Asp 740 745 750 755 Glu Lys Glu Ala Lys Lys Glu Gln Lys Glu Ala Glu Lys Glu Glu Lys 760 765 770 Glu Ala Val Lys Glu Glu Lys Lys Glu Ala Lys Glu Glu Lys Lys Ala 775 780 785 Val Lys Asn Glu Ala Lys Lys Lys 790 795 3 3332 DNA Bacillus sp. KSM-64 CDS (610)..(3075) sig_peptide (610)..(696) mat_peptide (697)..(3075) 3 agtacttacc attttagagt caaaagatag aagccaagca ggatttgccg atgcaaccgg 60 cttatattta gagggaattt ctttttaaat tgaatacgga ataaaatcag gtaaacaggt 120 cctgatttta tttttttgaa tttttttgag aactaaagat tgaaatagaa gtagaagaca 180 acggacataa gaaaattgta ttagttttaa ttatagaaaa cgcttttcta taattattta 240 tacctagaac gaaaatactg tttcgaaagc ggtttactat aaaaccttat attccggctc 300 tttttttaaa cagggggtga aaattcactc tagtattcta atttcaacat gctataataa 360 atttgtaaga cgcaatatac atcttttttt tatgatattt gtaagcggtt aaccttgtgc 420 tatatgccga tttaggaagg gggtagattg agtcaagtag tcataattta gataacttat 480 aagttgttga gaagcaggag agaatctggg ttactcacaa gttttttaaa acattatcga 540 aagcactttc ggttatgctt atgaatttag ctatttgatt caattacttt aataatttta 600 ggaggtaat atg atg tta aga aag aaa aca aag cag ttg att tct tcc att 651 Met Met Leu Arg Lys Lys Thr Lys Gln Leu Ile Ser Ser Ile -25 -20 ctt att tta gtt tta ctt cta tct tta ttt ccg aca gct ctt gca gca 699 Leu Ile Leu Val Leu Leu Leu Ser Leu Phe Pro Thr Ala Leu Ala Ala -15 -10 -5 -1 1 gaa gga aac act cgt gaa gac aat ttt aaa cat tta tta ggt aat gac 747 Glu Gly Asn Thr Arg Glu Asp Asn Phe Lys His Leu Leu Gly Asn Asp 5 10 15 aat gtt aaa cgc cct tct gag gct ggc gca tta caa tta caa gaa gtc 795 Asn Val Lys Arg Pro Ser Glu Ala Gly Ala Leu Gln Leu Gln Glu Val 20 25 30 gat gga caa atg aca tta gta gat caa cat gga gaa aaa att caa tta 843 Asp Gly Gln Met Thr Leu Val Asp Gln His Gly Glu Lys Ile Gln Leu 35 40 45 cgt gga atg agt aca cac gga tta caa tgg ttt cct gag atc ttg aat 891 Arg Gly Met Ser Thr His Gly Leu Gln Trp Phe Pro Glu Ile Leu Asn 50 55 60 65 gat aac gca tac aaa gct ctt gct aac gat tgg gaa tca aat atg att 939 Asp Asn Ala Tyr Lys Ala Leu Ala Asn Asp Trp Glu Ser Asn Met Ile 70 75 80 cgt cta gct atg tat gtc ggt gaa aat ggc tat gct tca aat cca gag 987 Arg Leu Ala Met Tyr Val Gly Glu Asn Gly Tyr Ala Ser Asn Pro Glu 85 90 95 tta att aaa agc aga gtc att aaa gga ata gat ctt gct att gaa aat 1035 Leu Ile Lys Ser Arg Val Ile Lys Gly Ile Asp Leu Ala Ile Glu Asn 100 105 110 gac atg tat gtc atc gtt gat tgg cat gta cat gca cct ggt gat cct 1083 Asp Met Tyr Val Ile Val Asp Trp His Val His Ala Pro Gly Asp Pro 115 120 125 aga gat ccc gtt tac gct gga gca gaa gat ttc ttt aga gat att gca 1131 Arg Asp Pro Val Tyr Ala Gly Ala Glu Asp Phe Phe Arg Asp Ile Ala 130 135 140 145 gca tta tat cct aac aat cca cac att att tat gag tta gcg aat gag 1179 Ala Leu Tyr Pro Asn Asn Pro His Ile Ile Tyr Glu Leu Ala Asn Glu 150 155 160 cca agt agt aac aat aat ggt gga gct ggg att cca aat aat gaa gaa 1227 Pro Ser Ser Asn Asn Asn Gly Gly Ala Gly Ile Pro Asn Asn Glu Glu 165 170 175 ggt tgg aat gcg gta aaa gaa tac gct gat cca att gta gaa atg tta 1275 Gly Trp Asn Ala Val Lys Glu Tyr Ala Asp Pro Ile Val Glu Met Leu 180 185 190 cgt gat agc ggg aac gca gat gac aat att atc att gtg ggt agt cca 1323 Arg Asp Ser Gly Asn Ala Asp Asp Asn Ile Ile Ile Val Gly Ser Pro 195 200 205 aac tgg agt cag cgt cct gac tta gca gct gat aat cca att gat gat 1371 Asn Trp Ser Gln Arg Pro Asp Leu Ala Ala Asp Asn Pro Ile Asp Asp 210 215 220 225 cac cat aca atg tat act gtt cac ttc tac act ggt tca cat gct gct 1419 His His Thr Met Tyr Thr Val His Phe Tyr Thr Gly Ser His Ala Ala 230 235 240 tca act gaa agc tat ccg cct gaa act cct aac tct gaa aga gga aac 1467 Ser Thr Glu Ser Tyr Pro Pro Glu Thr Pro Asn Ser Glu Arg Gly Asn 245 250 255 gta atg agt aac act cgt tat gcg tta gaa aac gga gta gca gta ttt 1515 Val Met Ser Asn Thr Arg Tyr Ala Leu Glu Asn Gly Val Ala Val Phe 260 265 270 gca aca gag tgg gga act agc caa gca aat gga gat ggt ggt cct tac 1563 Ala Thr Glu Trp Gly Thr Ser Gln Ala Asn Gly Asp Gly Gly Pro Tyr 275 280 285 ttt gat gaa gca gat gta tgg att gag ttt tta aat gaa aac aac att 1611 Phe Asp Glu Ala Asp Val Trp Ile Glu Phe Leu Asn Glu Asn Asn Ile 290 295 300 305 agc tgg gct aac tgg tct tta acg aat aaa aat gaa gta tct ggt gca 1659 Ser Trp Ala Asn Trp Ser Leu Thr Asn Lys Asn Glu Val Ser Gly Ala 310 315 320 ttt aca cca ttc gag tta ggt aag tct aac gca aca agt ctt gac cca 1707 Phe Thr Pro Phe Glu Leu Gly Lys Ser Asn Ala Thr Ser Leu Asp Pro 325 330 335 ggg cca gac caa gta tgg gta cca gaa gag tta agt ctt tct gga gaa 1755 Gly Pro Asp Gln Val Trp Val Pro Glu Glu Leu Ser Leu Ser Gly Glu 340 345 350 tat gta cgt gct cgt att aaa ggt gtg aac tat gag cca atc gac cgt 1803 Tyr Val Arg Ala Arg Ile Lys Gly Val Asn Tyr Glu Pro Ile Asp Arg 355 360 365 aca aaa tac acg aaa gta ctt tgg gac ttt aat gat gga acg aag caa 1851 Thr Lys Tyr Thr Lys Val Leu Trp Asp Phe Asn Asp Gly Thr Lys Gln 370 375 380 385 gga ttt gga gtg aat gga gat tct cca gtt gaa gat gta gtt att gag 1899 Gly Phe Gly Val Asn Gly Asp Ser Pro Val Glu Asp Val Val Ile Glu 390 395 400 aat gaa gcg ggc gct tta aaa ctt tca gga tta gat gca agt aat gat 1947 Asn Glu Ala Gly Ala Leu Lys Leu Ser Gly Leu Asp Ala Ser Asn Asp 405 410 415 gtt tct gaa ggt aat tac tgg gct aat gct cgt ctt tct gcc gac ggt 1995 Val Ser Glu Gly Asn Tyr Trp Ala Asn Ala Arg Leu Ser Ala Asp Gly 420 425 430 tgg gga aaa agt gtt gat att tta ggt gct gaa aaa ctt act atg gat 2043 Trp Gly Lys Ser Val Asp Ile Leu Gly Ala Glu Lys Leu Thr Met Asp 435 440 445 gtg att gtt gat gag ccg acc acg gta tca att gct gca att cca caa 2091 Val Ile Val Asp Glu Pro Thr Thr Val Ser Ile Ala Ala Ile Pro Gln 450 455 460 465 ggg cca tca gcc aat tgg gtt aat cca aat cgt gca att aag gtt gag 2139 Gly Pro Ser Ala Asn Trp Val Asn Pro Asn Arg Ala Ile Lys Val Glu 470 475 480 cca act aat ttc gta ccg tta gga gat aag ttt aaa gcg gaa tta act 2187 Pro Thr Asn Phe Val Pro Leu Gly Asp Lys Phe Lys Ala Glu Leu Thr 485 490 495 ata act tca gct gac tct cca tcg tta gaa gct att gcg atg cat gct 2235 Ile Thr Ser Ala Asp Ser Pro Ser Leu Glu Ala Ile Ala Met His Ala 500 505 510 gaa aat aac aac atc aac aac atc att ctt ttt gta gga act gaa ggt 2283 Glu Asn Asn Asn Ile Asn Asn Ile Ile Leu Phe Val Gly Thr Glu Gly 515 520 525 gct gat gtt atc tat tta gat aac att aaa gta att gga aca gaa gtt 2331 Ala Asp Val Ile Tyr Leu Asp Asn Ile Lys Val Ile Gly Thr Glu Val 530 535 540 545 gaa att cca gtt gtt cat gat cca aaa gga gaa gct gtt ctt cct tct 2379 Glu Ile Pro Val Val His Asp Pro Lys Gly Glu Ala Val Leu Pro Ser 550 555 560 gtt ttt gaa gac ggt aca cgt caa ggt tgg gac tgg gct gga gag tct 2427 Val Phe Glu Asp Gly Thr Arg Gln Gly Trp Asp Trp Ala Gly Glu Ser 565 570 575 ggt gtg aaa aca gct tta aca att gaa gaa gca aac ggt tct aac gcg 2475 Gly Val Lys Thr Ala Leu Thr Ile Glu Glu Ala Asn Gly Ser Asn Ala 580 585 590 tta tca tgg gaa ttt gga tac cca gaa gta aaa cct agt gat aac tgg 2523 Leu Ser Trp Glu Phe Gly Tyr Pro Glu Val Lys Pro Ser Asp Asn Trp 595 600 605 gca aca gct cca cgt tta gat ttc tgg aaa tct gac ttg gtt cgc ggt 2571 Ala Thr Ala Pro Arg Leu Asp Phe Trp Lys Ser Asp Leu Val Arg Gly 610 615 620 625 gaa aat gat tat gta act ttt gat ttc tat cta gat cca gtt cgt gca 2619 Glu Asn Asp Tyr Val Thr Phe Asp Phe Tyr Leu Asp Pro Val Arg Ala 630 635 640 aca gaa ggc gca atg aat atc aat tta gta ttc cag cca cct act aac 2667 Thr Glu Gly Ala Met Asn Ile Asn Leu Val Phe Gln Pro Pro Thr Asn 645 650 655 ggg tat tgg gta caa gca cca aaa acg tat acg att aac ttt gat gaa 2715 Gly Tyr Trp Val Gln Ala Pro Lys Thr Tyr Thr Ile Asn Phe Asp Glu 660 665 670 tta gag gaa gcg aat caa gta aat ggt tta tat cac tat gaa gtg aaa 2763 Leu Glu Glu Ala Asn Gln Val Asn Gly Leu Tyr His Tyr Glu Val Lys 675 680 685 att aac gta aga gat att aca aac att caa gat gac acg tta cta cgt 2811 Ile Asn Val Arg Asp Ile Thr Asn Ile Gln Asp Asp Thr Leu Leu Arg 690 695 700 705 aac atg atg atc att ttt gca gat gta gaa agt gac ttt gca ggg aga 2859 Asn Met Met Ile Ile Phe Ala Asp Val Glu Ser Asp Phe Ala Gly Arg 710 715 720 gtc ttt gta gat aat gtt cgt ttt gag ggg gct gct act act gag ccg 2907 Val Phe Val Asp Asn Val Arg Phe Glu Gly Ala Ala Thr Thr Glu Pro 725 730 735 gtt gaa cca gag cca gtt gat cct ggc gaa gag acg ccg cct gtc gat 2955 Val Glu Pro Glu Pro Val Asp Pro Gly Glu Glu Thr Pro Pro Val Asp 740 745 750 gag aag gaa gcg aaa aaa gaa caa aaa gaa gca gag aaa gaa gag aaa 3003 Glu Lys Glu Ala Lys Lys Glu Gln Lys Glu Ala Glu Lys Glu Glu Lys 755 760 765 gaa gca gta aaa gaa gaa aag aaa gaa gct aaa gaa gaa aag aaa gca 3051 Glu Ala Val Lys Glu Glu Lys Lys Glu Ala Lys Glu Glu Lys Lys Ala 770 775 780 785 atc aaa aat gag gct acg aaa aaa taatctaata aactagttat agggttatct 3105 Ile Lys Asn Glu Ala Thr Lys Lys 790 aaaggtctga tgcagatctt ttagataacc tttttttgca taactggaca tagaatggtt 3165 attaaagaaa gcaaggtgtt tatacgatat taaaaaggta gcgattttaa attgaaacct 3225 ttaataatgt cttgtgatag aatgatgaag taatttaaga gggggaaacg aagtgaaaac 3285 ggaaatttct agtagaagaa aaacagacca agaaatactg caagctt 3332 4 822 PRT Bacillus sp. KSM-64 4 Met Met Leu Arg Lys Lys Thr Lys Gln Leu Ile Ser Ser Ile Leu Ile -25 -20 -15 Leu Val Leu Leu Leu Ser Leu Phe Pro Thr Ala Leu Ala Ala Glu Gly -10 -5 -1 1 Asn Thr Arg Glu Asp Asn Phe Lys His Leu Leu Gly Asn Asp Asn Val 5 10 15 Lys Arg Pro Ser Glu Ala Gly Ala Leu Gln Leu Gln Glu Val Asp Gly 20 25 30 35 Gln Met Thr Leu Val Asp Gln His Gly Glu Lys Ile Gln Leu Arg Gly 40 45 50 Met Ser Thr His Gly Leu Gln Trp Phe Pro Glu Ile Leu Asn Asp Asn 55 60 65 Ala Tyr Lys Ala Leu Ala Asn Asp Trp Glu Ser Asn Met Ile Arg Leu 70 75 80 Ala Met Tyr Val Gly Glu Asn Gly Tyr Ala Ser Asn Pro Glu Leu Ile 85 90 95 Lys Ser Arg Val Ile Lys Gly Ile Asp Leu Ala Ile Glu Asn Asp Met 100 105 110 115 Tyr Val Ile Val Asp Trp His Val His Ala Pro Gly Asp Pro Arg Asp 120 125 130 Pro Val Tyr Ala Gly Ala Glu Asp Phe Phe Arg Asp Ile Ala Ala Leu 135 140 145 Tyr Pro Asn Asn Pro His Ile Ile Tyr Glu Leu Ala Asn Glu Pro Ser 150 155 160 Ser Asn Asn Asn Gly Gly Ala Gly Ile Pro Asn Asn Glu Glu Gly Trp 165 170 175 Asn Ala Val Lys Glu Tyr Ala Asp Pro Ile Val Glu Met Leu Arg Asp 180 185 190 195 Ser Gly Asn Ala Asp Asp Asn Ile Ile Ile Val Gly Ser Pro Asn Trp 200 205 210 Ser Gln Arg Pro Asp Leu Ala Ala Asp Asn Pro Ile Asp Asp His His 215 220 225 Thr Met Tyr Thr Val His Phe Tyr Thr Gly Ser His Ala Ala Ser Thr 230 235 240 Glu Ser Tyr Pro Pro Glu Thr Pro Asn Ser Glu Arg Gly Asn Val Met 245 250 255 Ser Asn Thr Arg Tyr Ala Leu Glu Asn Gly Val Ala Val Phe Ala Thr 260 265 270 275 Glu Trp Gly Thr Ser Gln Ala Asn Gly Asp Gly Gly Pro Tyr Phe Asp 280 285 290 Glu Ala Asp Val Trp Ile Glu Phe Leu Asn Glu Asn Asn Ile Ser Trp 295 300 305 Ala Asn Trp Ser Leu Thr Asn Lys Asn Glu Val Ser Gly Ala Phe Thr 310 315 320 Pro Phe Glu Leu Gly Lys Ser Asn Ala Thr Ser Leu Asp Pro Gly Pro 325 330 335 Asp Gln Val Trp Val Pro Glu Glu Leu Ser Leu Ser Gly Glu Tyr Val 340 345 350 355 Arg Ala Arg Ile Lys Gly Val Asn Tyr Glu Pro Ile Asp Arg Thr Lys 360 365 370 Tyr Thr Lys Val Leu Trp Asp Phe Asn Asp Gly Thr Lys Gln Gly Phe 375 380 385 Gly Val Asn Gly Asp Ser Pro Val Glu Asp Val Val Ile Glu Asn Glu 390 395 400 Ala Gly Ala Leu Lys Leu Ser Gly Leu Asp Ala Ser Asn Asp Val Ser 405 410 415 Glu Gly Asn Tyr Trp Ala Asn Ala Arg Leu Ser Ala Asp Gly Trp Gly 420 425 430 435 Lys Ser Val Asp Ile Leu Gly Ala Glu Lys Leu Thr Met Asp Val Ile 440 445 450 Val Asp Glu Pro Thr Thr Val Ser Ile Ala Ala Ile Pro Gln Gly Pro 455 460 465 Ser Ala Asn Trp Val Asn Pro Asn Arg Ala Ile Lys Val Glu Pro Thr 470 475 480 Asn Phe Val Pro Leu Gly Asp Lys Phe Lys Ala Glu Leu Thr Ile Thr 485 490 495 Ser Ala Asp Ser Pro Ser Leu Glu Ala Ile Ala Met His Ala Glu Asn 500 505 510 515 Asn Asn Ile Asn Asn Ile Ile Leu Phe Val Gly Thr Glu Gly Ala Asp 520 525 530 Val Ile Tyr Leu Asp Asn Ile Lys Val Ile Gly Thr Glu Val Glu Ile 535 540 545 Pro Val Val His Asp Pro Lys Gly Glu Ala Val Leu Pro Ser Val Phe 550 555 560 Glu Asp Gly Thr Arg Gln Gly Trp Asp Trp Ala Gly Glu Ser Gly Val 565 570 575 Lys Thr Ala Leu Thr Ile Glu Glu Ala Asn Gly Ser Asn Ala Leu Ser 580 585 590 595 Trp Glu Phe Gly Tyr Pro Glu Val Lys Pro Ser Asp Asn Trp Ala Thr 600 605 610 Ala Pro Arg Leu Asp Phe Trp Lys Ser Asp Leu Val Arg Gly Glu Asn 615 620 625 Asp Tyr Val Thr Phe Asp Phe Tyr Leu Asp Pro Val Arg Ala Thr Glu 630 635 640 Gly Ala Met Asn Ile Asn Leu Val Phe Gln Pro Pro Thr Asn Gly Tyr 645 650 655 Trp Val Gln Ala Pro Lys Thr Tyr Thr Ile Asn Phe Asp Glu Leu Glu 660 665 670 675 Glu Ala Asn Gln Val Asn Gly Leu Tyr His Tyr Glu Val Lys Ile Asn 680 685 690 Val Arg Asp Ile Thr Asn Ile Gln Asp Asp Thr Leu Leu Arg Asn Met 695 700 705 Met Ile Ile Phe Ala Asp Val Glu Ser Asp Phe Ala Gly Arg Val Phe 710 715 720 Val Asp Asn Val Arg Phe Glu Gly Ala Ala Thr Thr Glu Pro Val Glu 725 730 735 Pro Glu Pro Val Asp Pro Gly Glu Glu Thr Pro Pro Val Asp Glu Lys 740 745 750 755 Glu Ala Lys Lys Glu Gln Lys Glu Ala Glu Lys Glu Glu Lys Glu Ala 760 765 770 Val Lys Glu Glu Lys Lys Glu Ala Lys Glu Glu Lys Lys Ala Ile Lys 775 780 785 Asn Glu Ala Thr Lys Lys 790 

1-9. (Cancelled)
 10. A microorganism in which one or more gene(s) which participate in the middle to late stages of sporulation have been deleted or inactivated.
 11. The microorganism of claim 10, which is a bacterium belonging to the genus Bacillus.
 12. The microorganism of claim 10, which is Bacillus subtilis.
 13. The microorganism of claim 10, wherein said one or more gene(s) are expressed in any of stages II, III, IV, and V of sporulation and thus participate in sporulation.
 14. The microorganism of claim 10, wherein at least one gene to be deleted or inactivated is selected from the group consisting of sigE gene, sigF gene, spoIIE gene, spoIISB gene, sigG gene of Bacillus subtilis, a genes which falls within a region from spoIVCB to spoIIIC of Bacillus subtilis, and a genes equivalent to any one or more of these genes.
 15. A recombinant microorganism obtained by: incorporating into the microorganism of claim 10 a gene which encodes a protein or polypeptide and which has been ligated to a transcription initiation regulation region, a translation initiation regulation region, or a secretion signal region at the downstream end of the region.
 16. The recombinant microorganism of claim 15, wherein the transcriptional initiation regulation region, the translational initiation regulation region, or the secretion signal region is derived from a cellulase gene of a bacterium belonging to the genus Bacillus or from a 1 kb region extending upstream of the cellulase gene.
 17. The recombinant microorganism of claim 10, wherein the transcription initiation regulation region, the translation initiation regulation region, or the secretion signal region is derived from a cellulase gene having a sequence of SEQ ID NO: 1 or 3 or a sequence having a homology of 70% or more with the sequence of SEQ ID NO: 1 or
 3. 18. A method of producing a protein or polypeptide comprising: expressing said protein or polypeptide in the microorganism of claim
 15. 